Chemistry

Fundamentals of Biochemistry

Henry Jakubowski; Patricia Flatt

A complete open biochemistry work linking molecular structure and chemical reasoning with catalysis, metabolism, information pathways and guided investigations.

Prerequisites

General and organic chemistry, including functional groups, acid-base equilibria, thermodynamics and elementary reaction mechanisms. Introductory cell biology helps connect molecular events with cellular functions.

Difficulty Level
Intermediate
Academic Level
Undergraduate
biochemistrychemical mechanismsmetabolism

01 / Reading Guide

Reading Guide

Who this book is for

For students taking biochemistry after foundational chemistry and for readers who want to reason through molecular mechanisms. The online organization supports both a core course and more focused exploration of a pathway or experimental question. It is particularly useful when a learner can name a metabolic step but needs to explain the chemical transformations, energetic constraints and regulatory interactions that make the step meaningful.

Prerequisites

General and organic chemistry, including functional groups, acid-base equilibria, thermodynamics and elementary reaction mechanisms. Introductory cell biology helps connect molecular events with cellular functions.

What it covers

The work organizes structure and catalysis, bioenergetics and metabolism, information pathways and special topics alongside literature-based assessments and molecular modelling tutorials. Protein interactions, reaction mechanisms and cellular context link the units. The breadth supports selective routes, so the complete online collection should be treated as a single evolving work rather than several unrelated textbooks.

How to use it

Before memorizing a pathway, draw its carbon and energy bookkeeping and identify the chemical purpose of each step. Relate an enzyme mechanism to functional groups and protonation states. Use a molecular model to test a structural explanation, then compare it with an experimental observation. For a research-based assessment, state the question, control and inference separately. Revisit the underlying chemistry whenever a biological name becomes a substitute for an explanation.

Edition and sources

The author-attributed LibreTexts collection provides the complete work under its stated CC BY-NC-SA 4.0 terms, with material-specific attribution. It develops the earlier Biochemistry Online project; that predecessor and the present units are not counted as additional works. No publication year or ISBN is inferred from website updates.

Open the official resource